PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Dof
Protein Properties Length: 362aa    MW: 38695.9 Da    PI: 9.007
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91e-3877136362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e++lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  XP_015897477.1  77 ETSLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 136
                     6789*****************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3160125IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3279134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54480134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVFSSIPAYH DPSNWQQQPN QSTPGTHHTN SQFLPPPLPP PQTLPPPSQP HGVGGSGSIR  60
PGSMADRARM ANIPMPETSL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL  120
RNVPVGGGCR RNKRSKGSSS SKSPVSSDRQ TGSSTPSGSS TSSLPSNNTL APPDIIGLTN  180
QVPSLRLMAP LHHHLTDFAE MGFNYGALNY AAMGGGGDFN FQIGSSSTGS LGRLPTDGMM  240
DHQWRLQQAS QFPFMATAGL DPSQPPPPAG LFESGGVDAL GYHHHLRTKS TTSGLASQLA  300
SVKMEDHQST EMNLSKQLLG ISSNINPGND DNQYWSGGGT SNTTAWTDLS GFSSSSTTSN  360
PL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897477.10.0PREDICTED: dof zinc finger protein DOF5.1-like isoform X1
TrEMBLA0A061ET141e-109A0A061ET14_THECC; DNA binding with one finger 2.4, putative
STRINGVIT_08s0007g00180.t015e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.22e-45OBF-binding protein 3